Question: Transcription factor targets for Human and Mouse genes
0
gravatar for priyankaraina10
6 months ago by
priyankaraina1010 wrote:

Dear All,

I want to get transcription factor targets for my list of genes (For Human and Mouse)

I have found ENCODE Transcription Factor Targets database (The link is given below). But I am looking for some other databases also if available. I will really appreciate if anyone can suggest any other database.

http://amp.pharm.mssm.edu/Harmonizome/dataset/ENCODE+Transcription+Factor+Targets

Thank you

ADD COMMENTlink modified 6 months ago by ATpoint26k • written 6 months ago by priyankaraina1010
2
gravatar for Batu
6 months ago by
Batu170
Batu170 wrote:

Hi,

There are some other good databases like ChIP-X or TRANSFAC databases in Harmonizome. You can find by filtering 'transcription factors' from there. : http://amp.pharm.mssm.edu/Harmonizome/download

There is also a GitHub page that covers some databases for same purpose: https://github.com/slowkow/tftargets

Additionally, you can check RegNetwork: http://www.regnetworkweb.org

ADD COMMENTlink modified 6 months ago • written 6 months ago by Batu170

Thank you for getting back

ADD REPLYlink written 6 months ago by priyankaraina1010
1
gravatar for ATpoint
6 months ago by
ATpoint26k
Germany
ATpoint26k wrote:

ReMap2018. Please also use the search function, this has been addressed many times before.

ADD COMMENTlink written 6 months ago by ATpoint26k
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