I am trying to look at my gene model on JBrowse and keep getting "an error was encountered when displaying this track. Diagnostic message: [object ProgressEvent]". I can't seem to find what it mean anywhere. Can someone please help?
Can you try converting the GFF3 into a json track and see what would happen? That may give you more information if anything goes wrong. Also, it is usually useful to run a GFF3 check using gff_validator, even though your GFF3 seems to be fine.
I am presuming you mean convert to json using bin/flatfile-to-json.pl --gff yourfile.gff --trackLabel. Just wanted to clarify that in case it was unclear for Hwaterma
Thanks for clarifying that for me!
Hi Hwaterma, I'm a JBrowse dev. It is hard to debug this without more info. If you can share any more data or info about your setup let me know
Here is the top of my GFF file:
utg002023l_pilon . contig 1 648515 . . . ID=utg002023l_pilon;Name=utg002023l_pilon
utg002023l_pilon maker gene 52467 53191 . + . ID=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1;Name=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1
utg002023l_pilon maker mRNA 52467 53191 405 + . ID=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1-mRNA-1;Parent=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1;Name=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1-mRNA-1;_AED=0.24;_eAED=0.27;_QI=0|1|0|1|0|0|2|0|134
utg002023l_pilon maker exon 52467 52596 . + . ID=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1-mRNA-1:exon:36371;Parent=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1-mRNA-1
utg002023l_pilon maker exon 52917 53191 . + . ID=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1-mRNA-1:exon:36372;Parent=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1-mRNA-1
How is this track opened? Did you use the Track->Open track inside JBrowse or loaded via command line? Also the formatting on this gff is messed up by posting so it's hard to tell if it's formatted right, but a cursory look appears to not have anything wrong
I am on the online JBrowse and I click on Track. That opens a pull down menu. Then I click on open track file or URL. The it make a track for me but says the error instead of my info.
What browser are you using? I do not get any error doing this in a local instance
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