Question: Mutated gene based pathway enrichment
0
gravatar for CY
12 months ago by
CY470
United States
CY470 wrote:

My goal is to find dysfunctioned pathways using mutated genes of hundred tumor samples as input.

There are tools like GSEA that take expression data and perform pathway enrichment. I am wondering if there is similar enrichment tools that take mutated genes as input instead and perform enrichment analysis?

mutation enrichment • 311 views
ADD COMMENTlink modified 12 months ago by H.Hasani910 • written 12 months ago by CY470
0
gravatar for H.Hasani
12 months ago by
H.Hasani910
Freiburg, Germany
H.Hasani910 wrote:

You can try geneontology or enrichr if you are not an R user. You can also start with this thread Tutorial: Easy way to do GO enrichment in R and take it from there to explore other R packages.

hth

ADD COMMENTlink written 12 months ago by H.Hasani910
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