Mutated gene based pathway enrichment
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4.7 years ago
CY ▴ 740

My goal is to find dysfunctioned pathways using mutated genes of hundred tumor samples as input.

There are tools like GSEA that take expression data and perform pathway enrichment. I am wondering if there is similar enrichment tools that take mutated genes as input instead and perform enrichment analysis?

enrichment mutation • 893 views
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4.7 years ago
H.Hasani ▴ 990

You can try geneontology or enrichr if you are not an R user. You can also start with this thread Tutorial: Easy way to do GO enrichment in R and take it from there to explore other R packages.

hth

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