Question: Mutated gene based pathway enrichment
gravatar for CY
5 months ago by
United States
CY420 wrote:

My goal is to find dysfunctioned pathways using mutated genes of hundred tumor samples as input.

There are tools like GSEA that take expression data and perform pathway enrichment. I am wondering if there is similar enrichment tools that take mutated genes as input instead and perform enrichment analysis?

mutation enrichment • 213 views
ADD COMMENTlink modified 5 months ago by H.Hasani790 • written 5 months ago by CY420
gravatar for H.Hasani
5 months ago by
Freiburg, Germany
H.Hasani790 wrote:

You can try geneontology or enrichr if you are not an R user. You can also start with this thread Tutorial: Easy way to do GO enrichment in R and take it from there to explore other R packages.


ADD COMMENTlink written 5 months ago by H.Hasani790
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