Question: Mutated gene based pathway enrichment
gravatar for CY
12 months ago by
United States
CY470 wrote:

My goal is to find dysfunctioned pathways using mutated genes of hundred tumor samples as input.

There are tools like GSEA that take expression data and perform pathway enrichment. I am wondering if there is similar enrichment tools that take mutated genes as input instead and perform enrichment analysis?

mutation enrichment • 311 views
ADD COMMENTlink modified 12 months ago by H.Hasani910 • written 12 months ago by CY470
gravatar for H.Hasani
12 months ago by
Freiburg, Germany
H.Hasani910 wrote:

You can try geneontology or enrichr if you are not an R user. You can also start with this thread Tutorial: Easy way to do GO enrichment in R and take it from there to explore other R packages.


ADD COMMENTlink written 12 months ago by H.Hasani910
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2189 users visited in the last hour