Question: Mutated gene based pathway enrichment
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gravatar for CY
6 weeks ago by
CY370
United States
CY370 wrote:

My goal is to find dysfunctioned pathways using mutated genes of hundred tumor samples as input.

There are tools like GSEA that take expression data and perform pathway enrichment. I am wondering if there is similar enrichment tools that take mutated genes as input instead and perform enrichment analysis?

mutation enrichment • 118 views
ADD COMMENTlink modified 6 weeks ago by H.Hasani760 • written 6 weeks ago by CY370
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gravatar for H.Hasani
6 weeks ago by
H.Hasani760
Freiburg, Germany
H.Hasani760 wrote:

You can try geneontology or enrichr if you are not an R user. You can also start with this thread Tutorial: Easy way to do GO enrichment in R and take it from there to explore other R packages.

hth

ADD COMMENTlink written 6 weeks ago by H.Hasani760
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