I have an XMFA alignment of >400 taxa, with 2,000 loci. I need to find where each locus begins and ends, as in a partition file. Next step I will extract the single-locus alignments for dN/dS from the fasta-version of this genome alignment.
Is there a quick way to find start-end positions for each gene? Like a partition file for a phylogeny reconstruction. It takes too long to go through one by one by Ctrl+F.