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• converting SAMRecord to JSON or String format
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• Converting UUID downloaded from GDC to TCGA names
  hi! I have dwnloaaded files regarding breast cancer genome transcription with the following pytho...
• VEP JSON output parsing
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• create plink files from 23andMe JSON files
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• Download all SRA of one species
  I try to run the code below #!/usr/bin/python2.7 import json, urllib query = '"Vibrio cholerae...
• Conventions for sorting provenance (original URL, processing steps) in VCF file
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• Querying VEP using REST API
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• VCF annotations -> readable info using PyVCF?
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• Is There A Way To Start From 454'S ".Fna" And ".Qual" Files In Gkno?
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• Samtools: Why Have I Been Using "View" Command For Mpileup
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• Create a File format to store Variant
  Hi, BED format or VCF format are not well designed to store [hgvs][1] notation and metadatas of ...
• Samtools view does not recognize that I already have index file
  Hello, I am trying to extract reads at 1 base pair from many bam files. Each bam file has a bai ...
• Should We Be Using Much More Json In Our Delimited Data Formats?
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• How To Specify Positional Argument Order In A Gkno Tool
  Hi, I'm integrating a custom tool into gkno. My tool uses positional arguments that need to be i...