Question: CNVkit bam file
0
gravatar for donglei.hu
12 days ago by
donglei.hu10
donglei.hu10 wrote:

I am using CNVkit to generate CNV calls. My question is, is it better to use base quality score re-calibrated bam file than original bam file?

sequencing • 79 views
ADD COMMENTlink written 12 days ago by donglei.hu10

My guess is it makes no difference. Does the documentation states one needs to perform base score recalibration in order to use CNVkit?

ADD REPLYlink written 12 days ago by h.mon26k

The document didn't mention this. I am sure CNVkit works without recalibration. I am just wondering if people usually do recalibration before running CNVkit.

ADD REPLYlink written 12 days ago by donglei.hu10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1001 users visited in the last hour