Entering edit mode
4.8 years ago
ghadou.ouss
•
0
Hello dear community, i want to retrieve all the informations about "Glioblastoma" study (Nature 2008) using Rstudio from cBioportal. Selected genes: "COL4A1, PDPN, GDF15, IGFBP2, SPARCL1, SPRY1, VEGFA, RBP1, NRP2, MFF ,TSPAN6, SGCD ,FZD7, HBA2, HBA1, CAVIN1, MTSS1, DICER1, BASP1, CXCR4, OAS1, NDP, CCN1, PTPRZ1, GPNMB, BTG2 ,GATM ,RUFY3, LUM, GBP1, PLCB1, PLP1, SCG2, CSRP2, CRYAB, SGK1, COL4A2, COL11A1, COL6A3, IGFBP3, KYNU ,SERPINE1, CMTM3, DNAJC12, PTHLH, ANXA1, VIM, NAV1, HBEGF, TAGLN, IGF2BP3, CRISPLD2, COL13A1, LDB3"
Can somebody lead me. help would be so appreciated.
What have you already tried to do? Do you not know where the survival information can be found? Did you look at the functions on the cBioPortal website already (rudimentary survival analysis is possible via the website)?
Thank you for your response Mr. Kevin, actually i used the 'cgsdr' package related to cBioportal, here is my code on Rstudio:
But for me it seems to be not clear visualizing it on the screen of console. i want to do something like: getting survival results as CSV format or plot.
Please use
ADD COMMENT/ADD REPLY
when responding to existing posts to keep threads logically organized.SUBMIT ANSWER
is for new answers to original question.Please use the formatting bar (especially the
code
option) to present your post better. I've done it for you this time.thank you Mr.genomax for your advice
If I run your code, I receive an error message:
Also, why do you have these 2 lines of code?
Sorry, can you please contact cBioPortal directly for help?
try