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• prophage database to generated simulated prophage reads
  I want to generate simulated reads of prophages. Is there any prophage database that I can use. S...
• Simulating Bacterial Population
  Is there any software available for simulating a bacterial population which contains similar stra...
• tool for simulating genomes based on observed mutations?
  I have sequenced a set of bacterial clones, derived from the same reference strain, and identif...
• Low coverage genome simulation
  Hello! Is there any program you can recommend me to simulate a genome? I want to simulate a low ...
• Characteristics of Bacterial Populations with Similar Strains
  I have a few questions about bacterial populations which contain several strains of a bacterium. ...
• Tree independent simulation of haploid sequence evolution
  Hello everyone, I have performed numerous simulations of nucleotide sequence evolutions down phy...
• Simulating Trio Data
  Which tool could be used to generate/simulate parents-offspring whole genome sequences (human) in...
• Prediction of operon in bacterial genomes
  Is there any tool available for predicting operon in whole bacterial genomes? I found many paper...
• Simulating Cnv Into Genome Reference
  Hi everybody, I´d like to know if someone has some hint to simulate introducing CNVs into genome ...
• Bacterial transcriptional gene regulatory network reconstruction from RNA-seq gene expression data?
  I would greatly appreciate suggestions on how to infer and reconstruct a genome-scale regulatory ...
• STAR for bacterial genome
  Hi Biostars, Is it fine to use STAR for bacterial data (no splicing)? Any comments/suggestions a...
• pipelines for pan-genome analysis
  I have bacterial genome and  which pipeline is best  for pan-genome analysis ? 
• bacterial genome alignment
  hi everyone, Can we perform a genome alignment in MAUVE without having a reference genome ?
• Find genomic Islands
  How to predict genomic islands in a newly sequenced bacterial genome?  
• Disparity in number of read strandedness for Long Insert identification
  I'm testing Pindel's detection of Long Inserts using a modified bacterial genome sequence as a re...