Question: Maker usage and tBLASTn
0
gravatar for doramora
5 days ago by
doramora0
doramora0 wrote:

Hi I'm interested in tBLASTn, so I would like to blast some protein sequences on my genome. I was recommended to use Maker. Did you try it and it works?

assembly genome • 57 views
ADD COMMENTlink modified 5 days ago by lieven.sterck5.2k • written 5 days ago by doramora0
1
gravatar for lieven.sterck
5 days ago by
lieven.sterck5.2k
VIB, Ghent, Belgium
lieven.sterck5.2k wrote:

short answer: NO

longer answer: if you really insist possible yes. However why use Maker if you can simply run a TBlastN against your genome. unless you want to use the result as input for gene prediction, there is no point in going through Maker

ADD COMMENTlink written 5 days ago by lieven.sterck5.2k
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