Visualize gene fusions in IGV
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2.0 years ago
Ron ★ 1.1k

Hi,

I am trying to visualize gene fusions from RNAseq data in IGV, that is detected by gene fusion software STAR-fusion and Fusion catcher. Does anybody know of steps to do this? I always find it complex to how to color,sort, group the reads so as to visualize the gene fusion.

This post is informative but does not seem to have steps to achieve this.

http://okko73313.blogspot.com/2014/10/visualizing-rna-seq-alignments-with.html

Thanks

Ron

RNA-Seq next-gen • 3.0k views
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