Question: GSM records without a corresponding SRA
0
gravatar for Sammy
4 days ago by
Sammy0
Sammy0 wrote:

Hey,

By your knowledge, is there possible for GSM records to not have a corresponding SRA page?

rna-seq • 65 views
ADD COMMENTlink written 4 days ago by Sammy0

could be. GSM provides sample details, and it could be possible that there are only final processed files rather than the raw data. What is your specific concern?

ADD REPLYlink written 4 days ago by Santosh Anand4.8k

No, there are raw data available in the GSM. I am looking for RNA-seq from the 3rd party to process. Sometimes the SRP series is not as easy to find but I get it most of the times. The thing is that I upload the samples directly into Galaxy with the SRP. I don't really know what to do just with the GSM.

I mean with the GSM I can only download them and then align them?

ADD REPLYlink written 4 days ago by Sammy0
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