Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,467 results • Page
1 of 2330
Sort: Rank
Rank
Views
Votes
Replies
1
vote
1
reply
55
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 1 hour ago by
GenoMax
141k • written 2 hours ago by
iamsmor
• 0
2
votes
2
replies
215
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 3 hours ago by
shelkmike
★ 1.2k • written 10 hours ago by
kirillkirilenko
▴ 30
0
votes
0
replies
39
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 3 hours ago by
Ram
43k • written 3 hours ago by
samuelkalandarov2002
• 0
1
vote
1
reply
179
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
3 hours ago by
otieno43
▴ 30
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
88
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
updated 3 hours ago by
Ram
43k • written 3 hours ago by
_quantum_girl_
▴ 10
0
votes
0
replies
40
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 4 hours ago by
Ram
43k • written 4 hours ago by
Javier
• 0
1
vote
4
replies
531
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 4 hours ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
38
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
4 hours ago by
enferdeflame
• 0
0
votes
0
replies
45
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
just now by
Chris
▴ 260
0
votes
0
replies
55
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 4 hours ago by
Ram
43k • written 6 hours ago by
carlopecoraro2
★ 2.5k
1
vote
9
replies
541
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 6 hours ago by
Elisabeth Gasteiger
★ 2.4k • written 10 hours ago by
Jacky
• 0
0
votes
1
reply
135
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 6 hours ago by
GenoMax
141k • written 8 hours ago by
predeus
★ 1.9k
0
votes
1
reply
146
views
DEseq2
RNA-seq
DESeq2
updated 4 hours ago by
Ram
43k • written 9 hours ago by
rrehimi
• 0
0
votes
0
replies
59
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 4 hours ago by
Ram
43k • written 7 hours ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
200
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 8 hours ago by
Juke34
8.5k • written 8 hours ago by
njornet
▴ 20
0
votes
0
replies
60
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
8 hours ago by
Novogene
▴ 410
0
votes
1
reply
352
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 4 hours ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
1
vote
2
replies
209
views
Korean human genome reference file
GWAS
reference
imputation
updated 6 hours ago by
GenoMax
141k • written 10 hours ago by
SeoGyun
• 0
1
vote
4
replies
306
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
updated 6 hours ago by
GenoMax
141k • written 10 hours ago by
n_navy
• 0
0
votes
2
replies
189
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 4 hours ago by
Ram
43k • written 10 hours ago by
rrehimi
• 0
0
votes
0
replies
65
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 4 hours ago by
Ram
43k • written 11 hours ago by
bioinfo223
▴ 10
0
votes
0
replies
75
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
11 hours ago by
P.
• 0
0
votes
0
replies
78
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
13 hours ago by
ekirsch
• 0
0
votes
0
replies
112
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
17 hours ago by
renan.igor
• 0
1
vote
1
reply
172
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 14 hours ago by
Ram
43k • written 20 hours ago by
anasjamshed
▴ 120
3
votes
1
reply
543
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 19 hours ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
98
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
20 hours ago by
synat.keam
▴ 100
0
votes
1
reply
186
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 22 hours ago by
GenoMax
141k • written 22 hours ago by
ycts
• 0
2
votes
3
replies
383
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
updated 23 hours ago by
swbarnes2
14k • written 1 day ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
213
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 1 day ago by
LChart
3.9k • written 1 day ago by
George
▴ 10
0
votes
3
replies
278
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
updated 41 minutes ago by
GenoMax
141k • written 1 day ago by
Kai Xin
• 0
1
vote
1
reply
174
views
Retrieve a % coverage for each transcript
RNA-seq
updated 1 day ago by
Ram
43k • written 1 day ago by
jammydodger123456
▴ 40
0
votes
1
reply
294
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 1 day ago by
Klaus S
▴ 150 • written 6 days ago by
Zeng Hao
▴ 40
0
votes
2
replies
268
views
How can I solve this error?
metal
16 hours ago by
22211020193
• 0
0
votes
0
replies
108
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 1 day ago by
GenoMax
141k • written 1 day ago by
srimmer
• 0
1
vote
2
replies
208
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 1 day ago by
Ram
43k • written 1 day ago by
aniigodwinn
• 0
2
votes
3
replies
295
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
6 hours ago by
valentinatsar
• 0
1
vote
3
replies
218
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 1 day ago by
Michael
54k • written 1 day ago by
LDT
▴ 330
1
vote
10
replies
511
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 3 hours ago by
GenoMax
141k • written 1 day ago by
me
• 0
2
votes
2
replies
291
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
3 hours ago by
nhaus
▴ 300
0
votes
0
replies
198
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
1 day ago by
Ronin
• 0
4
votes
2
replies
1.7k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 1 day ago by
Dr.Animo
▴ 130 • written 11 months ago by
BioinfoBee
• 0
2
votes
6
replies
553
views
Removing duplicates
duplicates
ONT
minimap2
11 hours ago by
quentinperriere
• 0
0
votes
1
reply
150
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 1 day ago by
DKA
▴ 40 • written 1 day ago by
james.melhorn
• 0
3
votes
4
replies
305
views
biomaRt error for different R version
biomaRt
R
updated 7 hours ago by
GenoMax
141k • written 1 day ago by
manaswwm
▴ 490
0
votes
1
reply
141
views
Freyja plot error
Freyja
updated 1 day ago by
Ram
43k • written 1 day ago by
Adyasha
• 0
1
vote
2
replies
155
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
1 day ago by
hagl
▴ 10
0
votes
0
replies
107
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
1 day ago by
chemokine-1
▴ 10
0
votes
4
replies
388
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
12 hours ago by
feather-W
• 0
116,467 results • Page
1 of 2330
Recent Votes
A: Out Of Disk Space With Picard Tools ?
Exporting WGCNA step-to-step network construction objects into igraph object
Comment: Downloaded pdb's on rcsb.org
Answer: How to compare the quality of assemblies
How to compare the quality of assemblies
A: Best strategy for gene annotation for de novo genome assembly without RNA-seq da
Comment: Questions about a bug when transferring cram file to bam file
Recent Locations •
All
Colombia/Bogotá,
just now
United States,
3 minutes ago
united state,
3 minutes ago
United States,
7 minutes ago
Machhagan,
10 minutes ago
United States,
11 minutes ago
France,
11 minutes ago
Recent Awards •
All
Commentator
to
GenoMax
141k
Centurion
to
jkbonfield
★ 1.2k
Popular Question
to
yueli7
▴ 250
Popular Question
to
Randy H
▴ 110
Popular Question
to
ManuelDB
▴ 80
Popular Question
to
lefthandgergo
▴ 10
Scholar
to
Juke34
8.5k
Recent Replies
Comment: Per base sequence content failed miserably
by
GenoMax
141k
If this is 16S sequencing just follow the standard workflows like Qiime2.https://docs.qiime2.org/2024.2/tutorials/overview/
Comment: Out Of Disk Space With Picard Tools ?
by
kjngo
• 0
Thanks changing the tmp dir fixed the out of disk space error for me as well.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
Download services for PDB are described on this page: https://www.rcsb.org/docs/programmatic-access/file-download-services It could be as …
Answer: How to compare the quality of assemblies
by
shelkmike
★ 1.2k
Since BUSCO results are almost identical but the assembly sizes differ significantly, I suppose that the difference between the assemblies …
Comment: differential gene expression analysis when not all samples have an untreated cou
by
nhaus
▴ 300
Thank you very much for your answer, that was very helpful! > Impossible to say. It depends on your data, particularly on how the donors …
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
bk11
★ 2.3k
This could be because they are probably merging two or more datasets. If you are merging two or more datasets, it will be very important th…
Answer: Problem with Mirdeep2 and Randfold output
by
otieno43
▴ 30
I sorted this out by first removing white space in the first line of the reference genome. Then indexed, the ran the mapper.pl script follo…
Comment: Questions about a bug when transferring cram file to bam file
by
GenoMax
141k
Just to be certain, you are saying that if OP runs `samtools view` without the explicit reference it will be automatically downloaded from …
Comment: Questions about a bug when transferring cram file to bam file
by
jkbonfield
★ 1.2k
That SQ M5 is chr1 in my copy of GRCh38 (Homo_sapiens.GRCh38_full_analysis_set_plus_decoy_hla.fa). I'm assuming your hg38.fa is not the sa…
Comment: What happened to Tombo Re-squiggle
by
Ram
43k
Please do not add answers unless you're answering the top level question. Instead, use `Add Comment` or `Add Reply` as appropriate. I've mo…
Comment: What happened to Tombo Re-squiggle
by
Joseph
• 0
Hi, Does anybody has the answer to this? I also want to resquiggle my data with Remora but do not quite get which is the appropriate com…
Comment: How To Identify The 16S Rrna Gene Sequence In A Genome
by
colindaven
6.3k
It's also worth mentioning `Barrnap` is in the bacterial annotation system **Prokka**. `Prokka` can be installed on Debian systems with `…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Elisabeth Gasteiger
★ 2.4k
See also https://www.uniprot.org/help/negative_datasets
Comment: Sheep reference genome remapping coordinates
by
valentinatsar
• 0
Thank you for your response As I can understand this tool takes sequence input files right? I have genome-wide genotypes instead of sequen…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
▴ 750
Ok I made this into an answer. Could you please accept it as such.
Traffic: 2488 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6