I am new to the world of assembling genomes and would like to run the Mira with IonTorrent unpaired reads. But assembly results in empty files.
The first step is to create a manifest file and then run:
mira manifest.conf> & log_assembly.txt
Below is the manifest file:
"project = MyFirstAssembly job = genome,denovo,accurate
readgroup = SomeUnpairedIonReadsIGotFromTheLab data = ../../assemblies/1sttrial/Coryne_1M.fastq technology = iontor"
Where is the error?