Off topic:How to get DNA sequences of multiple peptide sequences (25600) in R or Python
0
0
Entering edit mode
22 months ago
ishackm ▴ 100

Hi all,

I have a file of 25600 peptide sequences:

>sp

YYRITYGETGGNSPVQEFTVPGSK
>sp

YYTEFPTVLDITAEDPSK
>sp

YYTGVVNNNEMVALQR
>sp

YYTLNGSK
>sp

YYTSASGDEMVSLK
>sp

YYTYLIMNK
>sp

YYVTIIDAPGHR
>sp

I used EMBOSS Backtranseq to convert the peptide into DNA sequences, but it will only take 500 peptide sequences. Is there any way on R or Python where I can run a script that will convert the peptide sequences into DNA sequences please?

I new to this area of bioinformatics, so any help would be greatly appreciated.

Many Thanks,

Ishack

R dna sequencing python • 371 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2996 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6