Question

Linkage disequilibrium after HapMap

0

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6.6 years ago

Kizuna ▴ 870

Dear All,

After shutting down HapMap, I am finding some difficulties to assess the L.D between SNPs.. any suggestion about an alternative browser is welcomed ..

Thx

SNP linkage • 1.5k views

ADD COMMENT • link updated 4.8 years ago by Maki ▴ 10 • written 6.6 years ago by Kizuna ▴ 870

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Hi Kizuna, what do you mean by 'shutting down HapMap'? Also, to which 'browser' are you referring?

Kevin

ADD REPLY • link 6.6 years ago by Kevin Blighe 87k

score 0 · Answer 1 · 2019-06-21

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4.8 years ago

Pramod Shinde • 0

The automatic choice is Plink.

ADD COMMENT • link 4.8 years ago by Pramod Shinde • 0

score 0 · Answer 2 · 2019-06-21

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4.8 years ago

Maki ▴ 10

For simple lookups, see here (based on 1000 Genomes)

https://ldlink.nci.nih.gov/?tab=ldmatrix

ADD COMMENT • link 4.8 years ago by Maki ▴ 10