Question: Trying to install mira-4.0.2, error while make
0
gravatar for esilan
9 months ago by
esilan0
esilan0 wrote:

I have been trying to install mira version 4.0.2 to my Ubuntu system. I'm using the precompiled version. Today, I've successfully managed to load and configure with ./configure which successfully gives me;

Looks good, we do not expect compilation problems. Type 'make' to make the binaries and then 'make install' to install them.

but when I use make It gives me an error, tail looking like this;

 In file included from exp_flexer.cc:323:0:
/usr/include/FlexLexer.h:156:8: error: candidate is: void EXPFlexLexer::yy_init_buffer(yy_buffer_state*, std::istream&)
   void yy_init_buffer( yy_buffer_state* b, std::istream& s );
        ^~~~~~~~~~~~~~
Makefile:356: recipe for target 'exp_flexer.o' failed
make[5]: *** [exp_flexer.o] Error 1
make[5]: Leaving directory '/home/ece/Downloads/mira-4.0.2/src/io'
Makefile:276: recipe for target 'all' failed
make[4]: *** [all] Error 2
make[4]: Leaving directory '/home/ece/Downloads/mira-4.0.2/src/io'
Makefile:306: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory '/home/ece/Downloads/mira-4.0.2/src'
Makefile:259: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory '/home/ece/Downloads/mira-4.0.2/src'
Makefile:316: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/ece/Downloads/mira-4.0.2'
Makefile:262: recipe for target 'all' failed
make: *** [all] Error 2

And here is the full error for make: https://pastebin.com/T4ZgZRkD

I should also point out i know a newer version of mira exists, which I managed to work with before, but we would like to use MITObim which does not support mira versions higher than 4.0.2, so this is what im delibaretely trying to work on.

mira • 325 views
ADD COMMENTlink modified 9 months ago by genomax80k • written 9 months ago by esilan0
2
gravatar for genomax
9 months ago by
genomax80k
United States
genomax80k wrote:

I'm using the precompiled version

If you are using pre-compiled version then there is no need to make or configure or do anything else. Add execute permissions (if needed, chmod a+x mira) and start running.

ADD COMMENTlink modified 9 months ago • written 9 months ago by genomax80k

Agreed. Alternatively use conda.

ADD REPLYlink written 9 months ago by ATpoint32k
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