Entering edit mode
4.8 years ago
anjanas
•
0
Hello! I am trying to do DE expression for two color agilent array publicly available data set. I am unable to find the annotation library. I have pasted the link of the paper and datasets in the following. I am new toDNA microarray analysis. I have done affymetrix before and it was easy to find the platform on the GEO database. However, I am having hard time finding this library to annotate the probes. Please let me know if there are any options available! It will be very useful! Thanks! https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-145/
Click on the array type, find this link https://www.ebi.ac.uk/arrayexpress/arrays/A-MEXP-1152/?ref=E-MTAB-145, then see on the bottom the annotation file.
Thank You! So, I do not have a chip based data base to linkk probe ID to gene symbol and Entrez ID etc. I have a csv file with probe IDs and a reference seq ID. Can someone please help me to build a library or make a database linking the two?
Thanks!