Finding annotation package for two color agilent array data sets
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4.8 years ago
anjanas • 0

Hello! I am trying to do DE expression for two color agilent array publicly available data set. I am unable to find the annotation library. I have pasted the link of the paper and datasets in the following. I am new toDNA microarray analysis. I have done affymetrix before and it was easy to find the platform on the GEO database. However, I am having hard time finding this library to annotate the probes. Please let me know if there are any options available! It will be very useful! Thanks! https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-145/

agilent microarray gene differential expression • 1.1k views
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Click on the array type, find this link https://www.ebi.ac.uk/arrayexpress/arrays/A-MEXP-1152/?ref=E-MTAB-145, then see on the bottom the annotation file.

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Thank You! So, I do not have a chip based data base to linkk probe ID to gene symbol and Entrez ID etc. I have a csv file with probe IDs and a reference seq ID. Can someone please help me to build a library or make a database linking the two?

Thanks!

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