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• How To Download All Ncbi Gtex Eqtl Data
  Does anyone know how to download all the NCBI GTeX eQTLs? From the browser it is trivial to searc...
• How to determine effect of SNP on the expression of pseudogene.
  Hi i am working on linkage of pseudogene to the progression of disease. I have list of pseudogene...
• GEO datasets for the eqtl analysis
  Hello, How can I extract all datasets from GEO relating to Alzheimer's samples from GEO for eqtl...
• How to interpret the eQTLs in cancer
  According to the paper [PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 c...
• How to perform eQTL study if i have small sample size?
  Hi All, I would like to study the variant effect in gene expression (eQTL) Currently, I am ha...
• how to find tissue specific eqtls?
  Say, I have two tissues, from each one I called eQTLs, with effect sizes and p-values. My questio...
• How The Data Is Compiled For The Databases Eqtl At Prichard Lab And Gtex(Genotype Tissue Expression)
  Hi I am using the results from the two databases 1. eQTL at prichard lab 2. GTEx EQTL browser. In...
• Reproduction eQTL GTex Box plot
  HiI need to regenerate the eqtl boxplot graph forsome of my snps of interest. I can see the eqt...
• Multiple tissue eQTL list
  I know there is a similar question asked 3.7 years ago: a similar question. I'd like to see if th...
• GTEX - how to upload more than one rsIDs to get gene expression or eQTL information
  Hi everyone, I am trying to see how my variants affect the host gene -or other eQTLs- to see th...
• how to verify cis-eQTL results
  I have performed a cis eQTL in tumor tissue in breast cancer, I got some results and I don't kn...
• Visualisation of SNPs in R
  Does anyone have any suggestions of how best to visualise SNP locations in relation to their near...
• How to normalise RNA-Seq counts for eQTL analysis with MT-eQTL
  Hello, I'm interested in carrying out an eQTL analysis with my RNA-Seq data using the MT-eQTL ap...
• How to check if a SNP exist in eQTL
  Hi all I wonder if there is a database in eQTL that I can download and check if the relationship...
• Datasets Downloads From Eqtl.Uchicago.Edu
  hello, everyone: I am doing a job of eqtl gene collection. From biostar, one good website name e...
• cis-eQTL Results Visualization
  Hi Guys,   does some one know how to visualize cis-eQTL results?   I have found Reveal, ggbio...
• GTEx files, single tissue cis-eQTLs
  Hi all, I'm using the GTEx analyzed files from single tissue eQTLs at https://www.gtexportal.org...
• Filtering Precomuted Set Of Eqtl Associations
  Hello, I have been given a precomputed statistical analysis set (analysis was performed on plink...
• Accounting for hidden confounding factors in eQTL analysis
  I'm attempting to conduct an eQTL analysis. Broadly speaking, I'm attempting to use Matrix eQTL t...
• Can I do eqtl mapping combining RNA-seq and Microarray data?
  Hi guys, I have 100 samples with RNA-seq and genotyping data, and another 100 samples from the o...
• The gene expression effect of eQTL variants in high LD
  Dear all, As far as I found, the GTEx portal provided the effect size (aFC) only for the most si...
• Questions of rs17632542 in cis-eQTL-GTEx-V8
  Hi All, I find a very confusing question about eQTL of rs17632542. rs17632542 was identified a...