Question: Snpeff use in 2019
0
gravatar for dorokhin.alex.v
17 months ago by
dorokhin.alex.v0 wrote:

Hello! Please tell me how to connect the version of the annotation Ensemble 3.96 (new) to Snpeff. I was unable to edit the correct snpEffect.config, according to the instructions from the site (http://snpeff.sourceforge.net/SnpEff_manual.html#buildAddConfig ).

Maybe the problem is that since 2017(http://snpeff.sourceforge.net/index.html) it seems the program has not been updated at all?

Does anyone have experience using SnpeFF now with up-to-date annotation versions?

Thanks you

snp vcf • 401 views
ADD COMMENTlink written 17 months ago by dorokhin.alex.v0

Maybe the problem is that since 2017 it seems the program has not been updated at all?

https://github.com/pcingola/SnpEff/commits/master

last commit May 8, 2019

ADD REPLYlink written 17 months ago by Pierre Lindenbaum131k
1

The last release was made on Nov 2017.

https://github.com/pcingola/SnpEff/releases

ADD REPLYlink written 17 months ago by Arup Ghosh2.7k

Thank you, but when I download the latest version

wget http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip

there is the exact same version for 2017? Sorry, I can’t figure out how to install the latest version, and also the new version is not installed.

ADD REPLYlink written 17 months ago by dorokhin.alex.v0

Please tell me how you can install this program from the github

ADD REPLYlink written 17 months ago by dorokhin.alex.v0

Please tell me how you can install this program from the github

ADD REPLYlink written 17 months ago by dorokhin.alex.v0

Contact the developer. It looks like you would have to compile the GitHub code if you want to run that, but why would you? The version on GitHub could be unstable.

ADD REPLYlink written 17 months ago by Kevin Blighe67k
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