I am using cBioPortal database to explore more about my proteins of interest. I have read the tutorials that is provided in the cBioPortal website. However, I could not find any information that how I can compare the expression of my proteins's mRNA against PAM50 and its correlation with the expression of my bait protein's mRNA. I am using a breast cancer dataset from cBioPortal database that has both mRNA and protein expression data.
I need to create some plots presenting mRNA expression against PAM50. In other words, how cBioPortal can correlate mRNA expression with PAM50 and my bait protein's expression?
I would highly appreciate your great help and advice.
Best wishes, Farah