Mauve contig orderer and ProgressiveMauve error 2

Question

[gustavo.teixeira]

Lately I'm not being able to run neither progrssiveMauve or the contig Orderer within the mauve software, the error log acuses an "error 2" and that it can run progressiveMauve because there is "no such file or directory".

Running alignment. Executing progressiveMauve --output=/home/gustavo/Documentos/arquivos_genoma/LABIM22/Scaffold1_medusa/latest_scaffold_9gaps/scaffold_ordering/alignment1/alignment1

--skip-refinement

--weight=200

--output-guide-tree=/home/gustavo/Documentos/arquivos_genoma/LABIM22/Scaffold1_medusa/latest_scaffold_9gaps/scaffold_ordering/alignment1/alignment1.guide_tree --backbone-output=/home/gustavo/Documentos/arquivos_genoma/LABIM22/Scaffold1_medusa/latest_scaffold_9gaps/scaffold_ordering/alignment1/alignment1.backbone /home/gustavo/Documentos/arquivos_genoma/LABIM22/Scaffold1_medusa/latest_scaffold_9gaps/scaffold_ordering/alignment1/BacillusvelezBac57.fasta /home/gustavo/Documentos/arquivos_genoma/LABIM22/Scaffold1_medusa/latest_scaffold_9gaps/scaffold_ordering/alignment1/scaffold_medusa_LABIM22.fasta Error running aligner. java.io.IOException: Cannot run program "progressiveMauve": error=2, No such file or directory

I assume that the program can't be found by the command line (which I already checked) but it is being executed at first for what it looks like

Thanks for all the help

[Joe]

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