chip-seq visualize tool IGV

Question

[yueli7]

Hello,

I tried to use IGV to visualize my chip-seq peak file.

Why it is so strange? The peak is not smooth?

Thanks in advance for any help!

Best,

Yue

https://ibb.co/Chh2dZY

[Arup Ghosh]

While embedding an image just copy the image address and use the Image option in the editor, also use the same scale in all the IGV tracks. The 2nd track seems to contain lots of noise may be caused by nonspecific binding of the antibody or sequencing instrument. Rather than visually exploring go for peak calling and use the peak file as a reference for IGV.

[ATpoint]

The link itself is broken, please fix.

[yueli7]

Hello, ATpoint,

I still can see it.

Thank you for your remainding.

Best,

yue