Question: Go Partition Database or another like tool
gravatar for Vincent Laufer
12 months ago by
Vincent Laufer1.1k
United States
Vincent Laufer1.1k wrote:

Does the Go Partition Database, or any like entity, still exist on the web?

To clarify, I want to group pathways together into higher-level super pathways or ontologies. Specifically, I would like to do more than group the pathways based on information content; if at all possible I would like to label each one as well.

I know they can be grouped into process, component etc. using GO Slim; but I am looking for something more granular than just 3 categories, but less granular than an individual pathways.

This is what led me to Alterovitz et al. (linked above); Figure 1 contains approximately what I want, but I need a way to be able to access the database or at least run it on my .gmt file.

dag go hierarchy gene ontology • 298 views
ADD COMMENTlink written 12 months ago by Vincent Laufer1.1k

I too am very interested in this. Preferably, I'm looking for an R package or other similar software package rather than an html site though. Any luck?

If I find something I will post back and let you know.

ADD REPLYlink written 11 months ago by jmah10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1256 users visited in the last hour