Motif identification in ripseq analysis

Question

[bioinfo_ga]

Hi, I have performed ripseq analysis using ripseeker tool where i have identified the peaks (binding). I want to perform motif identification for the same. Kindly suggest any tool.

Regards-

Answer 1

[ATpoint]

MEME-ChIP or Homer findMotifsGenome.pl. Please use google and the search function, there are plenty of posts on this.