Question: Automatic Coloring for Each Node According to Names in Cytoscape
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gravatar for hkarakurt
14 months ago by
hkarakurt100
hkarakurt100 wrote:

Hello, I have an interaction network with 18 nodes and 15000 edges. I want to visualize them in Cytoscape and give colors for each node automatically. I tried passthrough mapping but colors did not change at all. I know I can give color to each node manually but is there a way to do it easier?

Thank you in advance

cytoscape intercation network • 346 views
ADD COMMENTlink modified 14 months ago by scooter360 • written 14 months ago by hkarakurt100
1
gravatar for scooter
14 months ago by
scooter360
scooter360 wrote:

Hi, Definitely, you can set up a discrete mapper and then you can right-click and select "Mapping Value Generators" and choose one of the generators. Note that 18 different colors is probably too many for a user to distinguish, but it might be useful for exploration.

ADD COMMENTlink written 14 months ago by scooter360
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