I am trying to use KaryoploteR to draw ideograms, mark regions and also annotate them using kpPlotMarkers. While I am able to get nice looking ideograms, I am having some trouble with the labeling using kpPlotMarkers. The annotations overlap with adjacent chromosomes.
I was wondering if there is a way to increase the distance between the chromosomes or if I should just make independent images for each chromosome and put it together later. I tried playing around with some of the plot parameters such as data1 and data2 height and margins but they did not help. Would appreciate any suggestions!