Entering edit mode
3.9 years ago
fabbri.marco ▴ 10
I would like to use HMMcopy and ichorCNA for mm10. It looks there are no Mappability or Uniqueness of Reference Genome from ENCODE for mm10, so I can not generate the segmentation file. Anyone has already produced Mappability files for mm10 and wants to share? Any other suggestions?
There is a DNase mappability file available from ENCODE here.
Thank you but I do not think I can use it for HMMcopy
hi there. did you ever figure this out? i have the same problem