Question: how to test for significant phenotype enrichment in phylogenetic tree clusters
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gravatar for mikeb
6 weeks ago by
mikeb0
mikeb0 wrote:

I have a phylogenetic tree with strains grouped into specific clusters/lineages. Strains are assigned to phenotypes A and B. How can I test in which clusters strains of phenotype A are significantly enriched? Is a simple chi-square test valid?

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