I just sequenced bacterial genomes by PacBio Sequel. Compared to the RS II technology, I received a BAM file from the sequencing platform. I would like to import my sequencing data into SMRT Link, but I see that I need an XML file (the platform does not seem to be able to give me this file). Is there a way to generate this file or another way to integrate my data into SMRT Link?
I think you will have to ask your sequence provider to send you the XML file.