lncRNA Region analysis

Question

[Begali]

Dear all

I would like to analyze lncRNA for multiples samples, Kindly could you please share me best tutorial and workflow in order to perform as I am new

I do not know which one will be the best and available tutorial to use its workflow

with best regards

[ATpoint]

It is completely unclear what you exactly want to do. If it is standard RNA-seq analysis, please start with https://www.bioconductor.org/packages/devel/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html

[Begali]

@ATpoint Thanks for your link I have mRNA-seq as well as DNA-seq and my task is to identify analysis lncRNA such as 1- lncRNA expression in multiple samples 2- annotated genes with in lncRNA seq or near of exons and so on 3- SNPs in lncRNA

Another Q could lncRNA analyzed using mRNA or DNA-seq and I have to use only those available data (mRNA or DNA-seq) in my task as well as no new experimental will be performed in order to extract RNA-seq

thanks for your attention

with best regards