Question: lncRNA Region analysis
0
gravatar for Begali
13 months ago by
Begali0
Begali0 wrote:

Dear all

I would like to analyze lncRNA for multiples samples, Kindly could you please share me best tutorial and workflow in order to perform as I am new I do not know which one will be the best and available tutorial to use its workflow

with best regards

lncrna tools • 234 views
ADD COMMENTlink modified 13 months ago by WouterDeCoster44k • written 13 months ago by Begali0
1

It is completely unclear what you exactly want to do. If it is standard RNA-seq analysis, please start with https://www.bioconductor.org/packages/devel/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html

ADD REPLYlink written 13 months ago by ATpoint36k

@ATpoint Thanks for your link I have mRNA-seq as well as DNA-seq and my task is to identify analysis lncRNA such as 1- lncRNA expression in multiple samples 2- annotated genes with in lncRNA seq or near of exons and so on 3- SNPs in lncRNA

Another Q could lncRNA analyzed using mRNA or DNA-seq and I have to use only those available data (mRNA or DNA-seq) in my task as well as no new experimental will be performed in order to extract RNA-seq

thanks for your attention

with best regards

ADD REPLYlink written 13 months ago by Begali0
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