Dear Biostar community,
Is there quality control measure/score so that I can compare my output of Salmon using different kmer values? I have about 54 bp reads and have used kmer 31,29,27,25,... I would like to know if there is a QC measure/score so that I can know which kmer value to use?
I have looked ad the mapping rates, but it seems it does not tell a significant difference between different kmer values.
Thanks in advance, Karni