Question: Where can find we find dbSNP database for Human Genome GRCh38.p12
gravatar for gprashant17
6 months ago by
gprashant1770 wrote:

In the FTP website of dbSNP, I am able to find the latest releases for the human genome GRCh38.p13 and also for GRCh38.p7 in the archives. But I am using GRCh38.p12 for RNA-seq alignment. Is it fine to use the database corresponding to p7 or is there any way I can obtain the database for p12?

rna-seq snp dbsnp alignment vcf • 342 views
ADD COMMENTlink modified 6 months ago by Bastien Hervé4.5k • written 6 months ago by gprashant1770
gravatar for Bastien Hervé
6 months ago by
Bastien Hervé4.5k
Limoges, CBRS, France
Bastien Hervé4.5k wrote:

I think you are talking about the GRCh37.p13 not GRCh38.p13 from this ftp

You will be good using dbSNP GRCh38.p7 for your GRCh38.p12 genome, you will just miss some variations in few patches sequences coming along with minor release (.pX)

ADD COMMENTlink written 6 months ago by Bastien Hervé4.5k
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