I'm trying to use the package PopGenome but I'm running into a problem where all of my indivduals appear to be duplicated. When I use get.individuals like they did in the answer here: Defining populations in PopGenome after running readMS instead of getting (for example) "1", "2","3", etc, I'm getting "1", "1.2", "2", "2.2", "3", "3.2", etc. I have no idea why it's doing this and I've looked all through the documents I can find to try figure it out, but I just can't! I also had the exact same problem when I used the example data provided here (https://github.com/tonig-evo/workshop-popgenome/tree/master), so it doesn't appear to be a problem with my data.
My code so far is simply:
Genome <- readData("VCF", format="VCF") get.individuals(Genome)
Any help would be appreciated!