Question: Want to know which group is taken as control and which one is treated
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gravatar for shivam.ios197
11 days ago by
shivam.ios1970 wrote:

I used ballgown package to get fold change and I got the output but I don't know output file is for control vs treatment or treatment vs control?

I know too basic question but I am new to this please help

Thank you in advance

rna-seq • 95 views
ADD COMMENTlink written 11 days ago by shivam.ios1970

I know too basic question but I am new to this please help

Exactly, please add some information what you did and what you want to know. Do you mean that you are unsure that in case of a FC > 0 which sample was the denominator in sampleGroup1/sampleGroup2 ?

ADD REPLYlink written 11 days ago by ATpoint19k
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