I have Triticum monoccoccum ssp. monococcum transcriptome data performing DEG analysis by Deseq2 package. I filtered the genes that less than 0.05 p-values. While i convert Ensemble ID to Enterez ID using biomart package in R, the column that include Enterez ID is empty. The codes are here;
DGEgenes <- rownames(subset(DESeq.ds.results, padj < 0.05)) features <- getBM(attributes = c("ensembl_gene_id", "go_id", "entrezgene", "description", "interpro", "kegg_enzyme", "pfam"), filters = c("ensembl_gene_id"), values = DGEgenes, mart = ensembl)
How can i get enterez id that is required for KEGG enrichment analyisis or can someone please recommend other way to get them.