Question: Advices for Single Cell analysis. Softwares to go ?
1
gravatar for ZheFrench
15 months ago by
ZheFrench300
France
ZheFrench300 wrote:

Wondering what to use to start the analysis of a public single cells project.

Libraries were prepared with Smart -Seq2 protocol. Sequencing libraries were generated and indexed from 0.25 ng of cDNA per sample using the Nextera XT DNA Library Preparation Kit.

single cells • 309 views
ADD COMMENTlink written 15 months ago by ZheFrench300
1

perhaps not fully up-to-date anymore but still a good starting point :

https://github.com/seandavi/awesome-single-cell

ADD REPLYlink written 15 months ago by lieven.sterck8.7k

Should be. Last update 10 days back.

ADD REPLYlink written 15 months ago by genomax91k

HumanCellAtlas Github repo has a collection of single-cell analysis pipelines.

Code: https://github.com/HumanCellAtlas/skylab Wiki: https://github.com/HumanCellAtlas/skylab/wiki/SmartSeq2-Pipeline-(v0.2.0)

ADD REPLYlink written 15 months ago by Arup Ghosh2.7k
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