Question: WGCNA module-trait relationship
0
gravatar for mahnazkiani
10 months ago by
mahnazkiani50
United States
mahnazkiani50 wrote:

Hi,

Do we need to have identical samples for recorded traits and expresseion data in order to calculate the correlation between traits and modules?

Thanks!

rna-seq • 324 views
ADD COMMENTlink written 10 months ago by mahnazkiani50

identical samples

What do you mean?

ADD REPLYlink written 10 months ago by Kevin Blighe60k

I mean that do we need to have trait data for all samples that we have RNA-seq data for?

ADD REPLYlink written 10 months ago by mahnazkiani50

It would help. Why would you have any sample for which there was no trait / metadata?

ADD REPLYlink written 10 months ago by Kevin Blighe60k

Data that we have are from separated experiments, therefore for some of the samples we do have expression data, but no trait data

ADD REPLYlink written 10 months ago by mahnazkiani50
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