Hello, I'm very new in Eukaryotic genome annotation; going through internet I found Comparative annotation toolkit (CAT) is very good tool for doing so....I have installed Comparative annotation toolkit (CAT) using Anaconda after creating a separate python=2.7 environment using following commands. While I have installed BUSCO into base environment.
$conda create -n catpy27 python=2.7 pip $conda activate catpy27 $conda install -c bioconda comparative-annotation-toolkit
Now I don't understand what to do with that? Anyone acquainted with this kind of tool please suggest me any good tutorial or manual for Eukaryotic genome annotation using CAT.