where to find budding yeast gene annotation information when analysis scRNA-seq data
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2.4 years ago
hsu ▴ 40

Hi, I am analying yeast scRNA-seq data, I wanna add gene-annotaion information to my data, such as cell-cycle genes. Does anyone know anywhere to find these information for yeast? Thank you very much !

RNA-Seq yeast gene_annotaion single-cell Tutorial • 576 views
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2.4 years ago
hsu ▴ 40

Genome wide annotation for Yeast Bioconductor version: Release (3.9) Genome wide annotation for Yeast, primarily based on mapping using ORF identifiers from SGD. Author: Marc Carlson Maintainer: Bioconductor Package Maintainer <maintainer at="" bioconductor.org=""> Citation (from within R, enter citation("org.Sc.sgd.db")):

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is that a comment or your reply to your question?

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A reply to my question

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2.4 years ago
Carambakaracho ★ 2.9k

you find everything you need at the Saccharomyces genome database SGD

Reference Genome FTP for reference S288c: https://downloads.yeastgenome.org/sequence/S288C_reference/genome_releases/ (latest is R64-2-1)

The most common strains are also there: https://downloads.yeastgenome.org/sequence/strains/

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