samtools view NA12878_dedup.bam | cut -f 3 | sort -u > chr.list8
chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrM chrX chrY
I run the code above and got this list as chr1 chr10 chr11 .... I would like to get this sorted as chr1 chr2 chr3 ....
Can anyone help me out with this?