Entering edit mode
4.8 years ago
modarzi
▴
170
Hi, I want to download Non-coding RNA profiling by high throughput sequencing from GEO. My favorite data set is GSE114327. In that data set in Supplementary file section, I download just one of the file by clicking on the custom section from GSE114327_RAW.tar. After extracting the file,
I open “GSM3139597_CN34-CM-1_S57_L006_R1_001.hg38.437.oncRNA.cnt.txt” in notepad++ and see below content:
tag_15405 1
tag_29167 1
tag_34351 1
tag_56768 1
tag_68635 1
tag_69423 1
tag_9349 1
And I think this content isn’t the value of Non-coding RNA. I appreciate if anybody helps me to find the right way of downloading that dataset.
Data processing notes for this set say this:
You may have to go through their paper to find oncRNA.