Question: Mapping of novel peptide
gravatar for jahanshanzida
15 months ago by
jahanshanzida0 wrote:

Dear All,

I have got a couple of novel peptides by using PGA of R Bioconductor package. Now I want to map these novel peptides into genomic context. By using which bioinformatics tool I can map my novel peptides into New TIS, novel exon, a novel gene, novel splicing, UTR translation.

Thank you.

genome • 281 views
ADD COMMENTlink modified 15 months ago • written 15 months ago by jahanshanzida0

Is this a follow-up question on your previous post: Novel peptide identification ?

Do you actually have amino acid sequence now that you want to map to a genome reference?

ADD REPLYlink modified 15 months ago • written 15 months ago by genomax91k

Yes, this is a follow-up question.I have got two peptide by PGA bioconductor in R.These are :



I have then collected nucleotide sequence from USCS genome browser.


Now I want to map it like novel exon,novel gene,novel splicing so that I can understand the position of these novel peptide.Is there any tools for that.

Also,Do you know any other method so that I can make sure that these peptides are novel.

Thank you.


ADD REPLYlink modified 15 months ago by RamRS30k • written 15 months ago by jahanshanzida0

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time for the sequence. I am not sure what the alignment/amino acid sequence is supposed to look like so you can fix that.

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized. SUBMIT ANSWER is for new answers to original question. Thank you!

ADD REPLYlink written 15 months ago by genomax91k
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