I am trying to process the data found in PXD011453. This data contains data files in two formats: .raw and out.tar.
I have been told that there are methods to convert .raw files into .mzML files. Hereafter, I could use standard mass spec approach to process the data found here http://master.bioconductor.org/packages/release/workflows/vignettes/proteomics/inst/doc/proteomics.html.
However, this sounds a bit like a roundabout way to solve the issue. I was wondering if anyone had experience handling .raw files or out.tar files, and if so how was the processing approached?
This is my first go at proteomics so apologies if this is actually a silly question.
Any help or advice would be appreciated.