NCBI Taxon ID to IMG Genome IDs
0
1
Entering edit mode
2.0 years ago
Mohak ▴ 10

I have a bunch of NCBI taxon IDs and I want to find there IMG genome IDs.

I can try HTML parsing, but the link I get when I type a particular ncbi taxon ID is not unique.

For example,

when i search for ncbi taxon id 115711, i get the following link opened

https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=FindGenomes&page=displayTaxonList&searchFilter=t.ncbi_taxon_id&searchTerm=115713&file=t.ncbi_taxon_id9660

the above link has 9660 as an ID which is specific to that link, thus making the automation for each ncbi taxon id difficult.

Is there an easy way to fetch the corresponding IMG genome IDs for given NCBI taxon IDs?

bioinformatics parsing html parsing IDs • 737 views
ADD COMMENT

Login before adding your answer.

Traffic: 2287 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6