Question: NCBI Taxon ID to IMG Genome IDs
1
gravatar for Mohak
4 months ago by
Mohak10
Mohak10 wrote:

I have a bunch of NCBI taxon IDs and I want to find there IMG genome IDs.

I can try HTML parsing, but the link I get when I type a particular ncbi taxon ID is not unique.

For example,

when i search for ncbi taxon id 115711, i get the following link opened

https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=FindGenomes&page=displayTaxonList&searchFilter=t.ncbi_taxon_id&searchTerm=115713&file=t.ncbi_taxon_id9660

the above link has 9660 as an ID which is specific to that link, thus making the automation for each ncbi taxon id difficult.

Is there an easy way to fetch the corresponding IMG genome IDs for given NCBI taxon IDs?

ADD COMMENTlink written 4 months ago by Mohak10
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