I was wondering about options for creating the "chain" file for converting genome coordinates from one genome assembly to another. Malachi Griffith did an excellent summary about Converting Genome Coordinates From One Genome Version To Another but most of these tools actually need the "chain" file (that is the file that describes the pair-wise alignments between two genomes) so I would like to know how to create this file or whether there is any tool doing the coordinates transference just starting from the 2 genomes and a file of annotated features (eg bed, gff). Thanks!
Question: Create Chain File for Converting Genome Coordinates
14 months ago by
Gabriel • 30
Gabriel • 30 wrote:
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