Question: Finding non-regulatory regions genome wide for TF-binding ananlysis
gravatar for mc2548
10 months ago by
mc254830 wrote:

I have ATAC-seq reads genome wide and my next step is to look for enriched motifs or TF-binding motifs in these regions. As control I was planning on using non-open regions in the genome.

Is there any way to extract the non-coding regions in the genome which does not have ATAC peaks but is of same length as input sequences?

sequencing genome • 159 views
ADD COMMENTlink written 10 months ago by mc254830
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2069 users visited in the last hour