Finding non-regulatory regions genome wide for TF-binding ananlysis
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2.3 years ago
mc2548 ▴ 40

I have ATAC-seq reads genome wide and my next step is to look for enriched motifs or TF-binding motifs in these regions. As control I was planning on using non-open regions in the genome.

Is there any way to extract the non-coding regions in the genome which does not have ATAC peaks but is of same length as input sequences?

genome sequencing • 352 views
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