Question: Finding non-regulatory regions genome wide for TF-binding ananlysis
gravatar for mc2548
6 months ago by
mc254830 wrote:

I have ATAC-seq reads genome wide and my next step is to look for enriched motifs or TF-binding motifs in these regions. As control I was planning on using non-open regions in the genome.

Is there any way to extract the non-coding regions in the genome which does not have ATAC peaks but is of same length as input sequences?

sequencing genome • 123 views
ADD COMMENTlink written 6 months ago by mc254830
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