Genotype analysis of microarray data
1
0
Entering edit mode
2.2 years ago
fawazfebin ▴ 100

Hi , Can anyone guide me on some open source tools for genotype analysis of Illumina microarray data? As I understand Illumina Infinium microarray data have .idat file format. Are these files encrypted? Where can I find some sample files? Thanks in advance.

genotyping microarray illumina open source • 634 views
ADD COMMENT
1
Entering edit mode
2.2 years ago
Benn 8.2k

I don't have experience with this type of analysis, but a quick google search directs me to argyle. Have you tried this already? There is a vignette with examples available.

ADD COMMENT
0
Entering edit mode

Great thanks for the information,Benn ! Infact, even I am new to genotype analysis and did find some R packages for the same but was unsure of which software to select. Are you aware of any decrypting software related to microarray data?

ADD REPLY
1
Entering edit mode

Try limma's read.idat function, see if it works for you.

ADD REPLY

Login before adding your answer.

Traffic: 1644 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6