Question: How to download fastq from a browser 1000 genomes human chromosome?
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gravatar for manubiomed20
7 weeks ago by
manubiomed200 wrote:

I am learning how to assemble genomes using bwa. I would like to assemble only one chromosome. In the browser of 1000 genomes I found only the bam of chromosome 11 and 22. I would like to get the fastq, is this possible? do i need to convert bam to fastq? how do I do?

sequence assembly • 174 views
ADD COMMENTlink modified 7 days ago by Biostar ♦♦ 20 • written 7 weeks ago by manubiomed200

assemble genomes using bwa

Bwa is an aligner and not an assembler. Is alignment/mapping reads to a reference genome what you want to do?

ADD REPLYlink written 7 weeks ago by WouterDeCoster41k

What have you tried yourself already? Did you search google for example how to convert BAM to fastq? I can find a lot when I google that. Did you read 1000 genomes about how to download data there?

ADD REPLYlink written 7 weeks ago by Benn7.7k

Are you sure you are looking at the correct folder in 1000G? sounds like you are looking at some example folder.

ADD REPLYlink written 7 days ago by Giovanni M Dall'Olio26k
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