How to download fastq from a browser 1000 genomes human chromosome?
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2.5 years ago
manubiomed20 ▴ 10

I am learning how to assemble genomes using bwa. I would like to assemble only one chromosome. In the browser of 1000 genomes I found only the bam of chromosome 11 and 22. I would like to get the fastq, is this possible? do i need to convert bam to fastq? how do I do?

sequence Assembly • 532 views
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assemble genomes using bwa

Bwa is an aligner and not an assembler. Is alignment/mapping reads to a reference genome what you want to do?

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What have you tried yourself already? Did you search google for example how to convert BAM to fastq? I can find a lot when I google that. Did you read 1000 genomes about how to download data there?

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Are you sure you are looking at the correct folder in 1000G? sounds like you are looking at some example folder.

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