Where can I find a list of mitochondrial tRNA locations?
1
0
Entering edit mode
4.7 years ago
blur ▴ 280

Hi,

I am looking for genomic locations of tRNAs. It's not in gtRNAdb, mitotRNAdb (no genomic locations). I also didn't see it in gencode and a google search didn't help. Any ideas what I can do? Specifically I need human and mouse.

Thanks!

tRNAs • 726 views
ADD COMMENT
0
Entering edit mode

A simple google search turned up:
mitotRNAdb: http://mttrna.bioinf.uni-leipzig.de/mtDataOutput/
GtRNAdb: http://gtrnadb.ucsc.edu/Hsapi19/
mitochondrial tRNA gene database: http://mamit-trna.u-strasbg.fr

ADD REPLY
0
Entering edit mode

as I wrote in my post, none of these appear to have the information I require gtRNAdb specifically states it does not include NUMTs, the other two as far as I can see have no genomic locations,

ADD REPLY
1
Entering edit mode
4.7 years ago
GenoMax 141k

How about RNAcentral. Genomic locations were included for a couple of entries I checked :

Human tRNA
Mouse tRNA

I don't see any mitochondrial entries though.

ADD COMMENT
0
Entering edit mode

Perfect! thanks!

ADD REPLY

Login before adding your answer.

Traffic: 2950 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6